003 midi ports not there in midi studio setup? Unable to record midi now?

[TREBLEBLEED]

Everything was working with midi recording in pro tools but now the midi ports on the 003 do not work and are not even an option in the midi studio setup section? I am running 7.3 and have been when it was working. I have a motu midi timepiece av usb that is recognized but does not seem to communicate with pro tools anymore when trying to record with the v drums. Yes I checked the MOTU clockworks program and my routing is correct. My axiom keyboard controller does operate corrrectly when ran thru my motu. My v drums do not however. I am able to piggy back my vdrums midi out into my axiom 61 controllers midi input and it seems to work although the triggers are not equaling the same drums in strike as before. All toms are the same note etc instead of being correct as I midi mapped the v drums to equal strikes kit.. In doing this I have to have "all" as the midi input otherwise it does not record and also a midi pulse is constant on that tracks meter but does not get recorded although it looks like midi activity is on the meter.??? Never saw that before?????

Help I have to record some important people this week and need my midi working AAAAARGH!