[JKD99]

Re-name your record tracks the same as the upcoming cue number, and the files will automatically be named incrementally by take i.e: 2001-1, 2001-2, 2001PU-1, etc.
Make a beep file using 1k pops, then spot to the in footage, then hit option-H and shift it earlier 2 seconds (or 3 feet, whichever timescale you're using).
Hope this helps and doesn't annoy